Index

A

adaptive_equilibrate() (in module utils.equilibration)

B

blocking_error() (in module utils.statistics) bootstrap_resamples (utils.sweep_helpers.ThermoPoint attribute)

build_quality_flags() (in module utils.sweep_helpers) build_uncertainty_bundle() (in module utils.sweep_helpers)

C

calculate_autocorr() (in module utils.statistics) calculate_entropy() (in module utils.observables) calculate_thermodynamics() (in module utils.observables) calculate_vortex_density_numba() (in module models.simulation_base) calculate_vorticity_numba() (in module models.simulation_base) clock_energy_numba() (in module models.clock_model) clock_step_numba() (in module models.clock_model) clock_step_parallel_numba() (in module models.clock_model) clock_step_random_numba() (in module models.clock_model)

clock_wolff_step_numba() (in module models.clock_model) ClockSimulation (class in models.clock_model) collect_trace() (in module scripts.ising.diag_eq_traces) compute_kinetics_metrics() (in module utils.observables) compute_mean_intercept_length() (in module utils.kinetics_helpers) compute_thermo_observables() (in module utils.sweep_helpers) confidence (utils.sweep_helpers.ThermoPoint attribute) convergence_equilibrate() (in module utils.equilibration) convergence_equilibrate_with_status() (in module utils.equilibration)

D

derived_method (utils.sweep_helpers.ThermoPoint attribute) discrete_clock_energy_numba() (in module models.clock_model) discrete_clock_step_numba() (in module models.clock_model)

discrete_clock_step_parallel_numba() (in module models.clock_model) discrete_clock_step_random_numba() (in module models.clock_model) DiscreteClockSimulation (class in models.clock_model)

E

engs_arr (utils.sweep_helpers.RawThermoData attribute) ensure_results_dir() (in module utils.plotting) eq_max_steps (utils.sweep_helpers.ThermoPoint attribute) eq_probe_steps (utils.sweep_helpers.ThermoPoint attribute) eq_qs_min_steps (utils.sweep_helpers.ThermoPoint attribute)

eq_qs_sigma_threshold (utils.sweep_helpers.ThermoPoint attribute) equilibrate() (models.simulation_base.MonteCarloSimulation method) equilibrated_flag (utils.sweep_helpers.RawThermoData attribute) equilibration_steps (utils.sweep_helpers.RawThermoData attribute) estimate_effective_sample_size() (in module utils.statistics) estimate_relaxation_time_two_start() (in module utils.equilibration)

G

get_averaged_correlation() (in module utils.observables)

get_correlation_length() (in module scripts.ising.correlation_divergence) get_helicity_data_numba() (in module models.simulation_base)

I

ising_energy_numba() (in module models.ising_model) ising_step_numba() (in module models.ising_model) ising_step_parallel_numba() (in module models.ising_model)

ising_step_random_numba() (in module models.ising_model) ising_wolff_step_numba() (in module models.ising_model) IsingSimulation (class in models.ising_model)

M

mags_arr (utils.sweep_helpers.RawThermoData attribute) main() (in module models.clock_model) (in module models.ising_model) (in module models.xy_model) (in module scripts.clock.compare_discrete_vs_continuous) (in module scripts.clock.correlation_comparison) (in module scripts.clock.ordering_evolution) (in module scripts.clock.ordering_kinetics) (in module scripts.clock.temperature_sweep) (in module scripts.ising.coarsening_analysis) (in module scripts.ising.correlation_comparison) (in module scripts.ising.diag_eq_traces) (in module scripts.ising.measure_z) (in module scripts.ising.ordering_evolution) (in module scripts.ising.ordering_kinetics) (in module scripts.ising.temperature_sweep) (in module scripts.ising.wolff_efficiency) (in module scripts.xy.bkt_transition) (in module scripts.xy.compare_correlations) (in module scripts.xy.helicity_modulus) (in module scripts.xy.ordering_evolution) (in module scripts.xy.ordering_kinetics) (in module scripts.xy.temperature_sweep) meas_steps (utils.sweep_helpers.ThermoPoint attribute) model_cls (utils.sweep_helpers.ThermoPoint attribute) model_kwargs (utils.sweep_helpers.ThermoPoint attribute) models.clock_model module models.ising_model module models.simulation_base module models.xy_model module

module models.clock_model models.ising_model models.simulation_base models.xy_model scripts.clock.compare_discrete_vs_continuous scripts.clock.correlation_comparison scripts.clock.ordering_evolution scripts.clock.ordering_kinetics scripts.clock.temperature_sweep scripts.ising.coarsening_analysis scripts.ising.correlation_comparison scripts.ising.correlation_divergence scripts.ising.diag_eq_traces scripts.ising.measure_z scripts.ising.ordering_evolution scripts.ising.ordering_kinetics scripts.ising.temperature_sweep scripts.ising.wolff_efficiency scripts.xy.bkt_transition scripts.xy.compare_correlations scripts.xy.helicity_modulus scripts.xy.ordering_evolution scripts.xy.ordering_kinetics scripts.xy.temperature_sweep utils.equilibration utils.evolution_helpers utils.exceptions utils.kinetics_helpers utils.observables utils.plotting utils.statistics utils.sweep_helpers utils.system MonteCarloSimulation (class in models.simulation_base)

N

NumericalAnalysisError

P

pair_correlation_x() (in module utils.observables) PALETTE (in module scripts.ising.diag_eq_traces) parallel_sweep() (in module utils.system) parse_args_compat() (in module utils.system) plot_ordering_evolution() (in module utils.plotting)

plot_ordering_evolution_snapshots() (in module utils.plotting) plot_ordering_kinetics() (in module utils.plotting) plot_temperature_sweep() (in module utils.plotting) power_fit() (in module utils.statistics) prefer_ordered_start (utils.sweep_helpers.ThermoPoint attribute)

Q

qs_allow_stuck (utils.sweep_helpers.ThermoPoint attribute)

R

radial_average_sk() (in module utils.observables) RawThermoData (class in utils.sweep_helpers) run() (models.simulation_base.MonteCarloSimulation method)

run_divergence_analysis() (in module scripts.ising.correlation_divergence) run_ordering_evolution() (in module utils.evolution_helpers) run_ordering_kinetics() (in module utils.kinetics_helpers) run_with_cluster_sizes() (models.ising_model.IsingSimulation method)

S

save_plot() (in module utils.plotting) scripts.clock.compare_discrete_vs_continuous module scripts.clock.correlation_comparison module scripts.clock.ordering_evolution module scripts.clock.ordering_kinetics module scripts.clock.temperature_sweep module scripts.ising.coarsening_analysis module scripts.ising.correlation_comparison module scripts.ising.correlation_divergence module scripts.ising.diag_eq_traces module scripts.ising.measure_z module scripts.ising.ordering_evolution module scripts.ising.ordering_kinetics module scripts.ising.temperature_sweep module scripts.ising.wolff_efficiency module scripts.xy.bkt_transition module scripts.xy.compare_correlations module

scripts.xy.helicity_modulus module scripts.xy.ordering_evolution module scripts.xy.ordering_kinetics module scripts.xy.temperature_sweep module seed (utils.sweep_helpers.ThermoPoint attribute) seed_index (utils.sweep_helpers.RawThermoData attribute) (utils.sweep_helpers.ThermoPoint attribute) setup_logging() (in module utils.system) simulate_at_temperature() (in module utils.sweep_helpers) simulate_bkt_point() (in module scripts.xy.bkt_transition) simulate_correlation() (in module scripts.clock.correlation_comparison) (in module scripts.ising.correlation_comparison) (in module scripts.xy.compare_correlations) simulate_helicity() (in module scripts.xy.helicity_modulus) simulate_thermo_point() (in module utils.sweep_helpers) size (utils.sweep_helpers.RawThermoData attribute) (utils.sweep_helpers.ThermoPoint attribute) step() (models.clock_model.ClockSimulation method) (models.clock_model.DiscreteClockSimulation method) (models.ising_model.IsingSimulation method) (models.simulation_base.MonteCarloSimulation method) (models.xy_model.XYSimulation method) summarize_asymmetric_replicate_uncertainty() (in module utils.statistics) summarize_derived_observable() (in module utils.statistics) summarize_entropy_observable() (in module utils.statistics) summarize_primary_observable() (in module utils.statistics) summarize_replicate_samples() (in module utils.statistics) summarize_seed_ensemble() (in module utils.statistics) sweep_model() (in module scripts.clock.compare_discrete_vs_continuous)

T

TC_ISING (in module scripts.ising.diag_eq_traces) (in module scripts.ising.measure_z) (in module scripts.ising.wolff_efficiency) temperature (utils.sweep_helpers.RawThermoData attribute) (utils.sweep_helpers.ThermoPoint attribute)

temperature_index (utils.sweep_helpers.RawThermoData attribute) (utils.sweep_helpers.ThermoPoint attribute) ThermoPoint (class in utils.sweep_helpers)

U

utils.equilibration module utils.evolution_helpers module utils.exceptions module utils.kinetics_helpers module utils.observables module

utils.plotting module utils.statistics module utils.sweep_helpers module utils.system module

V

VibeSpinError

X

xy_energy_numba() (in module models.xy_model) xy_step_numba() (in module models.xy_model) xy_step_parallel_numba() (in module models.xy_model)

xy_step_random_numba() (in module models.xy_model) xy_wolff_step_numba() (in module models.xy_model) XYSimulation (class in models.xy_model)

Z

ZeroVarianceAutocorrelationError